Peer-Reviewed Journal Details
Mandatory Fields
Chenqi Wang, Neil Cafferkey, James Kennedy and John P. Morrison
2011
January
Parallel Computing
CG3DR: Coordination of icosahedral virus reconstruction using Condensed Graphs
Validated
()
Optional Fields
High performance computing Workflow Process coordination Web Com Condensed Graphs 3D reconstruction Virus structure RESOLUTION PARTICLES WORKFLOWS
37
451
465
We present a visual executable workflow for the three-dimensional reconstruction of icosahedral virus structure using the Traditional Model (TM) method. This workflow is implemented using WebCom, a metacomputer platform based on the Condensed Graph (CG) model. The CG model allows the application to be constructed with a structure that closely mirrors an abstract description of the workflow. By utilising WebCom's Integrated Development Environment, we also create a workbench environment that facilitates construction of related workflows through the reuse of components developed for the TM workflow. As an example of this component reuse, we outline the construction of a workflow for the alternative Unbiased Model reconstruction method. In addition, we demonstrate that using a separate machine for the coordination of such workflows results in improved execution times. (C) 2010 Elsevier B.V. All rights reserved.
DOI 10.1016/j.parco.2010.10.002
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