We report here the draft genome sequences of Macrococcus bovicus ATCC 51825(T), Macrococcus carouselicus ATCC 51828(T), Macrococcus equipercicus ATCC 51831(T), Macrococcus brunensis CCM4811(T); Macrococcus hajekii CCM4809(T), and Macrococcus lamae CCM4815(T). The availability of the genome sequences of these species will enable cross-species comparison, which could lead to a more comprehensive understanding of organisms of the Macrococcus genus.